33 books like Biochemical Pathways

By Gerhard Michal (editor), Dietmar Schomburg (editor),

Here are 33 books that Biochemical Pathways fans have personally recommended if you like Biochemical Pathways. Shepherd is a community of 11,000+ authors and super readers sharing their favorite books with the world.

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Book cover of The Music of Life: Biology Beyond Genes

Charlie Hodgman Author Of BIOS Instant Notes in Bioinformatics

From my list on the intersection of Bioinformatics and Systems Biology.

Why am I passionate about this?

Mathematics and chemistry were my strongest subjects at school, and I started programming computers when I was 16, but life seemed most important. Hence I studied biochemistry in university but moved into molecular biology with programming to assist the data analysis. My track record in successfully predicting new biology through computing led to a pharmaceutical company recruiting me to do bioinformatics for them. However, not content with studying genes and proteins, I pushed for bioinformatics to move up into metabolism, anatomy, and physiology. That’s when I discovered systems biology. My international reputation lies at this interface and includes discoveries in microbial physiology, botany, agriculture, animal biology, and antenatal diseases.

Charlie's book list on the intersection of Bioinformatics and Systems Biology

Charlie Hodgman Why did Charlie love this book?

This book vindicates my long-held view that biological objects do not act in isolation but interact with other things to make a living whole. It confirms my opinion that genes are not the master controllers of living things.

Furthermore, it showed me that systems occur at different physical scales (molecules, cells, organs, organisms, populations), that the systems at these scales influence each other, and that no scale is dominant. To understand biological/medical phenomena, including human consciousness, one must look at the (multi-scale) systems, not their individual components, in isolation. 

Finally, I found it a lot of fun to read because it uses hypothetical stories to illustrate points. For example, silicon-based aliens visit Earth but fail to understand why certain things and people behave the way that they do.

By Denis Noble,

Why should I read it?

2 authors picked The Music of Life as one of their favorite books, and they share why you should read it.

What is this book about?

What is Life? Decades of research have resulted in the full mapping of the human genome - three billion pairs of code whose functions are only now being understood. The gene's eye view of life, advocated by evolutionary biology, sees living bodies as mere vehicles for the replication of the genetic codes.

But for a physiologist, working with the living organism, the view is a very different one. Denis Noble is a world renowned physiologist, and sets out an alternative view to the question - one that becomes deeply significant in terms of the living, breathing organism. The genome is…


Book cover of An Introduction to Systems Biology: Design Principles of Biological Circuits

Charlie Hodgman Author Of BIOS Instant Notes in Bioinformatics

From my list on the intersection of Bioinformatics and Systems Biology.

Why am I passionate about this?

Mathematics and chemistry were my strongest subjects at school, and I started programming computers when I was 16, but life seemed most important. Hence I studied biochemistry in university but moved into molecular biology with programming to assist the data analysis. My track record in successfully predicting new biology through computing led to a pharmaceutical company recruiting me to do bioinformatics for them. However, not content with studying genes and proteins, I pushed for bioinformatics to move up into metabolism, anatomy, and physiology. That’s when I discovered systems biology. My international reputation lies at this interface and includes discoveries in microbial physiology, botany, agriculture, animal biology, and antenatal diseases.

Charlie's book list on the intersection of Bioinformatics and Systems Biology

Charlie Hodgman Why did Charlie love this book?

Of the various books available on this subject, I very much prefer this one because it makes it far easier to do systems biology.

First, it shows you how to view biological regulatory processes as a set of interacting components and their effect on each other. This alone can give clues to the behaviour of the system under different circumstances. However, it then goes on to show how these processes can be defined mathematically, which then enables us to get a quantitative view of what is going on.

When the predicted and observed numbers don’t match, we know that there is a gap in our knowledge and, hence, the place to discover new biology. Using this approach, I have.

By Uri Alon,

Why should I read it?

1 author picked An Introduction to Systems Biology as one of their favorite books, and they share why you should read it.

What is this book about?

Praise for the first edition:

... superb, beautifully written and organized work that takes an engineering approach to systems biology. Alon provides nicely written appendices to explain the basic mathematical and biological concepts clearly and succinctly without interfering with the main text. He starts with a mathematical description of transcriptional activation and then describes some basic transcription-network motifs (patterns) that can be combined to form larger networks. - Nature

[This text deserves] serious attention from any quantitative scientist who hopes to learn about modern biology ... It assumes no prior knowledge of or even interest in biology ... One final…


Book cover of Understanding the Control of Metabolism

Charlie Hodgman Author Of BIOS Instant Notes in Bioinformatics

From my list on the intersection of Bioinformatics and Systems Biology.

Why am I passionate about this?

Mathematics and chemistry were my strongest subjects at school, and I started programming computers when I was 16, but life seemed most important. Hence I studied biochemistry in university but moved into molecular biology with programming to assist the data analysis. My track record in successfully predicting new biology through computing led to a pharmaceutical company recruiting me to do bioinformatics for them. However, not content with studying genes and proteins, I pushed for bioinformatics to move up into metabolism, anatomy, and physiology. That’s when I discovered systems biology. My international reputation lies at this interface and includes discoveries in microbial physiology, botany, agriculture, animal biology, and antenatal diseases.

Charlie's book list on the intersection of Bioinformatics and Systems Biology

Charlie Hodgman Why did Charlie love this book?

This book turns on its head what I was taught about what controls metabolite flow through a pathway. It covers highly remarkable discoveries concerning which steps control changes in metabolite levels: those at the end rather than the start of pathways. This is amazing because it explains why decades of effort by bioengineers to overproduce particular metabolites was unsuccessful.

In response to a request from such a project, I explained how to block the inhibitory regulation by the early pathway step but added that, according to metabolic control theory, this would leave the end-product levels unchanged. I was correct on both counts! When my group later provided results from using a systems biology approach, they achieved their production target levels.

By David Fell,

Why should I read it?

1 author picked Understanding the Control of Metabolism as one of their favorite books, and they share why you should read it.

What is this book about?

Book by Fell, David


Book cover of Programming Perl: Unmatched Power for Text Processing and Scripting

Charlie Hodgman Author Of BIOS Instant Notes in Bioinformatics

From my list on the intersection of Bioinformatics and Systems Biology.

Why am I passionate about this?

Mathematics and chemistry were my strongest subjects at school, and I started programming computers when I was 16, but life seemed most important. Hence I studied biochemistry in university but moved into molecular biology with programming to assist the data analysis. My track record in successfully predicting new biology through computing led to a pharmaceutical company recruiting me to do bioinformatics for them. However, not content with studying genes and proteins, I pushed for bioinformatics to move up into metabolism, anatomy, and physiology. That’s when I discovered systems biology. My international reputation lies at this interface and includes discoveries in microbial physiology, botany, agriculture, animal biology, and antenatal diseases.

Charlie's book list on the intersection of Bioinformatics and Systems Biology

Charlie Hodgman Why did Charlie love this book?

This book has been a companion for almost three decades.

Any bona fide bioinformatician will write some program scripts if only to reformat data in new and useful ways. Perl is not the most efficient or widespread scripting language, but it has the advantage of being highly flexible. It offers many ways to write a program to carry out a given task, so even computationally naive programmers can generate effective code.

Even though I am no longer actively developing software, I still have occasions when it is quicker to script something in Perl than do battle with larger apps.

By Tom Christiansen, Larry Wall, Jon Orwant , Brian d Foy

Why should I read it?

1 author picked Programming Perl as one of their favorite books, and they share why you should read it.

What is this book about?

When it comes to learning Perl, programmers consider this book to be the undisputed bible. You not only learn every nuance of this language, you also get a unique perspective on the evolution of Perl and its future direction. The 4th edition has been thoroughly updated for version 5.14, with details on regular expressions, support for UNICODE, threads, and many other features. Many Perl books explain typeglobs, pseudohashes, and closures, but only this one shows the motivations behind these features and why they work the way they do. It's exactly what you'd expect from its prominent authors: Larry Wall is…


Book cover of Cessions of Land by Indian Tribes to the United States

Mark Stein Author Of How the States Got Their Shapes

From my list on boundaries.

Why am I passionate about this?

As a teenager, I wondered why my state, Maryland, didn’t include Delaware. Later, at the University of Wisconsin, I wondered why its northeastern peninsula was part of Michigan. Then I started wondering about boring borders -- why Colorado’s and Wyoming’s lines are where they are and not a mile or so so this way or that? I ended up writing How the States Got Their Shapes, followed by The People Behind the Borderlines.

Mark's book list on boundaries

Mark Stein Why did Mark love this book?

This book is not so much one to read, being more of an atlas. And atlases are expensive. Except this one. It’s free! Published by the U.S. Government in 1899 but still available online, it’s an extraordinary collection of Native American borders that got changed...and changed...and changed. It is history in the raw, from back in that time. More importantly, it is history we all need to know, if we are to know who we are as a nation today.

Book cover of A:shiwi A:wan Ulohnanne, The Zuni World

Eric Magrane Author Of The Sonoran Desert: A Literary Field Guide

From my list on looking at field guides and atlases in a new way.

Why am I passionate about this?

I love field guides. I can vividly picture my first copy of Peterson’s Field Guide to Birds, tattered and weather-beaten. I also love poetry and literature, so it seemed natural to me to bring the two together in my work. I’m from New England, but I've lived in the U.S. Southwest for over twenty years. Place is important to me: I think a lot about how we get to know and care for the places we live and call home and how we can work to be good neighbors. I worked for about a decade as a hiking guide and have also taught environmental education. I now teach geography at New Mexico State University. 

Eric's book list on looking at field guides and atlases in a new way

Eric Magrane Why did Eric love this book?

In the introduction to this book and catalog that features map art by Zuni artists, Jim Enote writes, “these maps are like relatives, like aunts and uncles that entrance us with narrations of places they have been to or heard about.” I love this way of thinking about maps as relational. As a non-Indigenous person viewing these maps, they help me to think about mapping and representations of place in new ways, and they challenge Western and colonial mapping traditions and cartographic practices that have often historically been put to the use of empire, land grabs, and greed.

By Jim Enote (editor), Jennifer McLerran (editor),

Why should I read it?

1 author picked A as one of their favorite books, and they share why you should read it.


Book cover of 21st Century Atlas of the Moon

John A. Read Author Of 50 Things to See with a Telescope: A young stargazer's guide

From my list on stargazing.

Why am I passionate about this?

My journey into astronomy began with a small and rickety telescope purchased at a local pharmacy. I found it fascinating to observe the Moon and Saturn with their rings using such meager equipment. I decided to share these views with others by writing my first book, 50 Things to See with a Small Telescope, an easy-to-understand beginner’s guide which I self-published and sold through Amazon starting in 2013. I have since published a number of other books on space for children. Besides writing, I work as the telescope operator at Burke-Gaffney Observatory. In 2020 I was awarded the Simon Newcomb Award for excellence in science communication.

John's book list on stargazing

John A. Read Why did John love this book?

Stargazers find out pretty quickly that the Moon can be a nuisance. After first quarter, the Moon illuminates the entire sky, and washing out all but the brightest stars and deep-sky objects like galaxies and nebulae. Seasoned astronomers soon learn that if the Moon is up, it’s what you should be observing! The challenge is to appreciate what you’re seeing.

When I was doing research for my book, 50 things to see on the Moon, I observed the Moon every chance I got, making notes about what I saw. But early on, I had no idea what I was looking at! This lunar atlas helped me appreciate the Moon’s topography, geography, geology, and so much more.

By Charles A. Wood, Maurice J. S. Collins,

Why should I read it?

1 author picked 21st Century Atlas of the Moon as one of their favorite books, and they share why you should read it.

What is this book about?

On most nights and days, the Moon is visible somewhere in the sky. For many, simply noticing it is a pleasure, yet it is also a fascinating world of craters, mountains, and volcanoes worthy of a closer look. The 21st Century Atlas of the Moon is uniquely designed for the backyard, amateur astronomer. As an indispensable guide to telescopic moon observation, it can be used at the telescope or as a desk reference. It is both accessible to the novice and valuable to the expert. With over two hundred Lunar Reconnaissance Orbiter images, the highest quality images of the moon…


Book cover of The Animal Atlas: A Pictorial Guide to the World's Wildlife

Deborah Niland Author Of Annie's Chair

From my list on to happily lose yourself for hours.

Why am I passionate about this?

Being a children’s illustrator and writer, I have built up a well-loved collection of childen’s books over the years. They must have great drawings and imaginative concepts. They are books I can come back to again and again. The books I have chosen are ones where you can lose yourself in their intricate detailed worlds and forget about day-to-day troubles for a while. These books can also help reluctant readers by enticing them into a visual world first and then into appreciating the written word. 

Deborah's book list on to happily lose yourself for hours

Deborah Niland Why did Deborah love this book?

I love to see beautifully drawn animals and this book has it in abundance. For animal lovers who want to know more about animal habitats worldwide. Find out interesting facts about hundreds of rare and common species and enjoy the detailed and beautiful artwork of Kenneth Lilly. This book is a delight for any age group.

By DK, Kenneth Lilly (illustrator),

Why should I read it?

1 author picked The Animal Atlas as one of their favorite books, and they share why you should read it. This book is for kids age 9, 10, 11, and 12.

What is this book about?

Explore the animal kingdom with this pictorial atlas of the world's wildlife.

Where do animals build their homes? How do they survive in very hot and cold climates? Why are so many species endangered?

Discover the answers to all these questions and many more in The Animal Atlas. Learn where in the world different animal species are found; what kind of habitats they live in; what they eat; and how they find their mates.

The Animal Atlas is packed with beautiful, life-like depictions of mammals, birds, reptiles, amphibians, and insects. Each species is carefully hand-drawn to show details of fur,…


Book cover of An Atlas of Anatomy for Artists

Brian C Hailes Author Of The Dynamic Female Figure

From my list on art references for drawing the human figure.

Why am I passionate about this?

Born at the base of the beautiful Wasatch Mountains, I began exploring and sketching the world—as most children do—at a very early age. I continued to pursue not only my artistic path through traditional schooling, higher education, and endless hours of practice, but also my love of storytelling. Intrigued by Science Fiction and Fantasy, many of my projects reflect elements of the fantastic, but I also appreciate the beauty and elegance in fine art masterpieces. I studied illustration and graphic design at Utah State University and the Academy of Art University in San Francisco. I currently live in Salt Lake City with my beautiful wife and four boys, where I continue to write, paint and draw regularly.

Brian's book list on art references for drawing the human figure

Brian C Hailes Why did Brian love this book?

This is the artist's anatomy book I grew up studying throughout high school and college, and it goes deep into the structural and anatomical anatomy of the body. It gives good illustrative examples of the skeletal and muscular systems as well as providing a few photographic references for both male and female anatomy. It is a pretty old volume, having been originally published in 1957, but the principles remain the same and it holds up pretty well. For anyone serious about learning to not only draw or paint from life, but also the imagination, I highly recommend this foundational and educational reference guide.

By Fritz Schider,

Why should I read it?

1 author picked An Atlas of Anatomy for Artists as one of their favorite books, and they share why you should read it.

What is this book about?

"I recommend Fritz Schider's Atlas of Anatomy for Artists to those who wish to increase their understanding of the human figure." — Robert Beverly Hale, Lecturer on Anatomy, Art Students League of New York. Adopted by Pratt Institute, Cleveland School of Art, Art Students League of New York, and others.

For more than forty years, this book has been recognized as the most thorough reference book on art anatomy in the world. Schider's complete, historical text is accompanied by a wealth of anatomical illustrations, plus a variety of plates showcasing master artists and their classic works on the anatomy of…


Book cover of The Human Brain Coloring Book

Rita Carter Author Of Consciousness

From my list on how to start exploring consciousness.

Why am I passionate about this?

I was hooked on brain science from the moment in the 1980s when I saw the first blurry images that revealed the physical markers of thought. I set out to find out all I could about this astonishing new area of discovery, but there was practically nothing to be found – neuroscience as we know it barely existed. I pounced on every new finding that emerged and eventually wrote what was one of the first books, Mapping the Mind, that made brain science accessible to non-scientists. There are hundreds of them now, and these are some of the best.

Rita's book list on how to start exploring consciousness

Rita Carter Why did Rita love this book?

This title is designed to help student neuroscientists grasp the staggeringly complicated anatomy of the brain by -literally – coloring-in its parts in a way that shows up their connections. Colouring- will take you straight into the Zone, and using this book will allow you to do it in public without people looking around for your carer. If it leaves you with a better idea of how the bits join up, count it as a bonus.

By Arnold B. Scheibel, Marian C. Diamond,

Why should I read it?

1 author picked The Human Brain Coloring Book as one of their favorite books, and they share why you should read it.

What is this book about?

Developed by internationally renowned neurosurgeons, this unique book is designed for students of psychology and the biological sciences, and medical, dental, and nursing students.


5 book lists we think you will like!

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